Biology Service Connections Source Information
Primary source:
Service connections connecting different biological sources are based on information from different databases. These service connections are continually maintained with latest available information and updates.
Principal sources for biology service connections are:
H.M. Berman, J. Westbrook, Z. Feng, G. Gilliland, T.N. Bhat, H. Weissig, I.N. Shindyalov, P.E. Bourne, The Protein Data Bank (2000) Nucleic Acids Research 28: 235-242. »
Zeming Lin, Halil Akin, Roshan Rao, Brian Hie, Zhongkai Zhu, Wenting Lu, Nikita Smetanin, Robert Verkuil, Ori Kabeli, Yaniv Shmueli, Allan dos Santos Costa, Maryam Fazel-Zarandi, Tom Sercu, Sal Candido, Alexander Rives. Evolutionary-scale prediction of atomic level protein structure with a language model. Science 379, 6637 (2023). »
Jumper, J. et al. “Highly accurate protein structure prediction with AlphaFold.” Nature, 596, pages 583–589 (2021). »
Fleming, J. et al. "AlphaFold Protein Structure Database and 3D-Beacons: New Data and Capabilities." Journal of Molecular Biology (2025). »
Cheng, J et al."Accurate Proteome-Wide Missense Variant Effect Prediction with AlphaMissense." Science (2023). »
The UniProt Consortium UniProt: the Universal Protein Knowledgebase in 2025. »
Ahmad S, da Costa Gonzales L J, Bowler-Barnett E H, Rice D L, Kim M, Wijerathne S, Luciani A, Kandasaamy S, Luo J, Watkins X, Turner E, Martin M J, UniProt Consortium The UniProt website API: facilitating programmatic access to protein knowledge »
CATH: Protein Structure Classification Database by I. Sillitoe, N. Dawson, T. Lewis, D. Lee, J. Lees, C. Orengo is licensed under a Creative Commons Attribution 4.0 International License.
Orengo, Christine A., et al. "CATH–a hierarchic classification of protein domain structures." Structure 5.8 (1997): 1093-1109. »
Exploring structural diversity across the protein universe with The Encyclopedia of Domains. Lau, A. M., Bordin, N., Kandathil, S. M., Sillitoe, I., Waman, V. P., Wells, J., Orengo, C. and Jones, D. T. Science 386, eadq4946 (2024). »