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FilledSmallSquareScriptBaselineShifts is an option for StyleBox which specifies the minimum distance in x-heights to shift subscripts and superscripts.

FilledSmallSquare The setting ScriptBaselineShifts->sub, sup uses shift sub for subscripts and sup for superscripts.

FilledSmallSquare A typical setting is ScriptBaselineShifts->{0.6, 0.9}.

FilledSmallSquare The default setting ScriptBaselineShifts->Automatic, Automatic shifts subscripts and superscripts by a distance which depends on their height.

FilledSmallSquare See The Mathematica Book: Section 2.8.11.

FilledSmallSquare See also: AdjustmentBox, RowMinHeight, ScriptMinSize.