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GenomeLookup

GenomeLookup
returns the positions of exact matches for the DNA sequence seq on the reference human genome.
GenomeLookup
returns at most n matches.
MORE INFORMATION
  • Sequences are represented as strings containing , , , C or , , , C.
  • The positions returned by GenomeLookup are given in the form where is a chromosome specification, strand is or , and and are start and end positions.
  • Human chromosomes are specified as , , , etc.
  • Bases are numbered in the 5' to 3' direction of the specified strand.
EXAMPLESCLOSE ALL
Basic Examples   (3)
Find the positions of a DNA sequence fragment on the human genome:
Get the number of matches:
Get the first 10 matches:
Find the positions of a DNA sequence fragment on the human genome:
In[1]:=
Click for copyable input
Out[1]=
 
Get the number of matches:
In[1]:=
Click for copyable input
Out[1]=
 
Get the first 10 matches:
In[1]:=
Click for copyable input
Out[1]=
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