Bookmarks is an option for Manipulate and related functions that gives a list of bookmark settings.
BoxStyle is an option for three-dimensional graphics functions that specifies how the bounding box should be rendered.
ControllerMethod is an option for Manipulate, Graphics3D, Plot3D, and related functions that specifies the default way that controls on an external controller device should ...
DataReversed is an option for ArrayPlot and related functions that specifies whether data should be plotted in reverse order.
DefaultBoxStyle is a low-level option for three-dimensional graphics functions that specifies the default style to use in rendering the bounding box.
DefaultTicksStyle is a low-level option for graphics functions that specifies the default style to use in rendering ticks.
GapPenalty is an option for SequenceAlignment and related functions that gives the additional cost associated with each gap corresponding to a run of insertions or deletions.
GenerateConditions is an option for Integrate, Sum, and similar functions that specifies whether explicit conditions on parameters should be generated in the result.
Masking
(Built-in Mathematica Symbol) Masking is an option for various image analysis and processing functions that specifies on which regions they should operate.
MaxPlotPoints is an option for plotting functions like ArrayPlot and ListPlot3D that specifies the maximum number of points that will explicitly be included in the output.