Analyze Segmented Cells in an Image

Use blob analysis techniques on a segmented image to mark the location and size of complete and nonoverlapping cells in a microscopic image.

    
In[1]:=
Click for copyable input
Separate the foreground from the background using binary thresholding and filling the holes.
In[2]:=
Click for copyable input
Out[2]=
Create a marker image by computing the local maxima of the distance transform map.
In[3]:=
Click for copyable input
Out[3]=
Compute the watershed segmentation of the cells using the estimated set of markers and select cells based on their area.
In[4]:=
Click for copyable input
Out[4]=
Highlight segmented cells using circles of equivalent disk radius.
In[5]:=
Click for copyable input
Out[5]=
Translate this page: