BioSequenceComplement

BioSequenceComplement[bioseq]

gives the biological complement of the sequence bioseq.

Details

  • The complement of a degenerate letter, which represents one of a number of potential bases, is another degenerate letter representing all potential complement bases.

Examples

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Basic Examples  (1)

Obtain the complementary sequence of a DNA sequence:

Scope  (3)

Obtain the complementary sequence of an RNA sequence:

Obtain the complementary sequence of a circular DNA sequence:

Obtain the complementary sequence of a DNA sequence:

Complements of DNA and RNA sequences also apply to sequences with degenerate letters:

Complements can be applied to extended types with the "ComplementLetterRules" property:

Properties & Relations  (2)

BioSequenceComplement is its own inverse:

The complement of a degenerate letter yields a degenerate letter covering potential complement outcomes:

Possible Issues  (1)

Complementation is not a biological operation that applies to peptide sequences:

Wolfram Research (2020), BioSequenceComplement, Wolfram Language function, https://reference.wolfram.com/language/ref/BioSequenceComplement.html.

Text

Wolfram Research (2020), BioSequenceComplement, Wolfram Language function, https://reference.wolfram.com/language/ref/BioSequenceComplement.html.

CMS

Wolfram Language. 2020. "BioSequenceComplement." Wolfram Language & System Documentation Center. Wolfram Research. https://reference.wolfram.com/language/ref/BioSequenceComplement.html.

APA

Wolfram Language. (2020). BioSequenceComplement. Wolfram Language & System Documentation Center. Retrieved from https://reference.wolfram.com/language/ref/BioSequenceComplement.html

BibTeX

@misc{reference.wolfram_2024_biosequencecomplement, author="Wolfram Research", title="{BioSequenceComplement}", year="2020", howpublished="\url{https://reference.wolfram.com/language/ref/BioSequenceComplement.html}", note=[Accessed: 21-December-2024 ]}

BibLaTeX

@online{reference.wolfram_2024_biosequencecomplement, organization={Wolfram Research}, title={BioSequenceComplement}, year={2020}, url={https://reference.wolfram.com/language/ref/BioSequenceComplement.html}, note=[Accessed: 21-December-2024 ]}