BioSequenceModify

BioSequenceModify[seq,"mod"]

gives the result of applying the modification "mod" to the sequence seq.

BioSequenceModify[seq,{"mod",params}]

specifies the parameters params for "mod".

BioSequenceModify[modspec]

represents an operator form of BioSequenceModify that can be applied to a biomolecular sequence.

Details

  • Translation Modifications
  • "DropIncompleteCodons"drop incomplete codons from the end of DNA or RNA
    "DropToStartCodon"drop letters from DNA or RNA until a start codon is found
    "DropFromStopLetter"drop the letters from a peptide after a stop letter is found

Examples

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Basic Examples  (3)

Drop letters at the end of a nucleotide sequence so only complete codons are present for translation:

Drop the letters up to a start codon in the default genetic translation table:

Drop terms after the stop letter in a peptide sequence:

Scope  (3)

Any genetic translation table entity can be used to specify start codons:

A specific codon or list of codons can be used as the start codon specification:

Modifications can be created in an operator form for later use:

Modifications with further specifications can also be used in operator form:

Possible Issues  (1)

A given modification may not apply to a particular type of sequence:

Wolfram Research (2020), BioSequenceModify, Wolfram Language function, https://reference.wolfram.com/language/ref/BioSequenceModify.html.

Text

Wolfram Research (2020), BioSequenceModify, Wolfram Language function, https://reference.wolfram.com/language/ref/BioSequenceModify.html.

BibTeX

@misc{reference.wolfram_2020_biosequencemodify, author="Wolfram Research", title="{BioSequenceModify}", year="2020", howpublished="\url{https://reference.wolfram.com/language/ref/BioSequenceModify.html}", note=[Accessed: 21-April-2021 ]}

BibLaTeX

@online{reference.wolfram_2020_biosequencemodify, organization={Wolfram Research}, title={BioSequenceModify}, year={2020}, url={https://reference.wolfram.com/language/ref/BioSequenceModify.html}, note=[Accessed: 21-April-2021 ]}

CMS

Wolfram Language. 2020. "BioSequenceModify." Wolfram Language & System Documentation Center. Wolfram Research. https://reference.wolfram.com/language/ref/BioSequenceModify.html.

APA

Wolfram Language. (2020). BioSequenceModify. Wolfram Language & System Documentation Center. Retrieved from https://reference.wolfram.com/language/ref/BioSequenceModify.html