TaxonomicSpecies

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Taxonomic and physical data for animals, plants, fungi and other microorganisms.

Entity["TaxonomicSpecies",name] or

represents an entity of type "TaxonomicSpecies".

[prop]

gives the value of a specified property.

[{propi,}]

gives the value of a list of properties.

EntityClass["TaxonomicSpecies",{propispeci,}]

represents a class of entities with values of propi defined by speci.

Sample Entities

Sample Entity Classes

Properties

  • AlternateCommonNamesalternate common names
    AlternateScientificNamesalternate scientific names
    AnnualNumberOfHumanCasualtiesannual number of human casualities
    AquaticBiomesaquatic biomes
    AssociatedBodySitesassociated body sites
    AssociatedHumanDiseasesassociated human diseases
    BiogeographicRegionsbiogeographic regions
    Biomassbiomass
    Biomesbiomes
    Classclass
    ClassCountclass count
    ClassListclass list
    Cohortcohort
    Colorscolors
    CommonNamecommon name
    ConservationStatusconservation status
    Divisiondivision
    Emojiemoji
    EntityTypeListentity type list
    Familyfamily
    FamilyCountfamily count
    FamilyListfamily list
    FederalTEStatusfederal threatened or endangered status
    Formform
    GenerationTimegeneration time
    Genusgenus
    GenusCountgenus count
    GenusListgenus list
    HabitatDepthhabitat depth
    HabitatElevationhabitat elevation
    HabitatRegionshabitat regions
    Heightheight
    Hostshosts
    Imageimage
    Infraclassinfraclass
    Infraorderinfraorder
    Kingdomkingdom
    KingdomCountkingdom count
    KingdomListkingdom list
    LatestYearOfPublicationlatest year of publication
    Lengthlength
    Lifespanlifespan
    MaximumRecordedLengthmaximum recorded length
    MaximumRecordedLifespanmaximum recorded lifespan
    MaximumRecordedWeightmaximum recorded weight
    MaximumTemperatureTolerancemaximum temperature tolerance
    MinimumTemperatureToleranceminimum temperature tolerance
    Namename
    NCBITaxonomyIDNCBI Taxonomy ID
    NucleotideSequenceLengthnucleotide sequence length
    NumberOfChildTaxanumber of child taxa
    NumberOfChromosomesnumber of chromosomes
    ObservationCountriesobservation countries
    ObservationLocationsobservation locations
    ObservationOceansobservation oceans
    Orderorder
    OrderCountorder count
    OrderListorder list
    OriginalYearOfPublicationoriginal year of publication
    ParentTaxonparent taxon
    Parvorderparvorder
    PhyleticGroupsphyletic groups
    Phylumphylum
    PhylumCountphylum count
    PhylumListphylum list
    PrimaryTaxonomicSequenceprimary taxonomic sequence
    RefSeqAssemblyAccessionNumberRefSeq assembly accession number
    ScientificNamescientific name
    Sectionsection
    Seriesseries
    SiblingTaxasibling taxa
    Speciesspecies
    SpeciesAuthorityspecies authority
    SpeciesCountspecies count
    SpeciesGroupspecies group
    SpeciesListspecies list
    SpeciesSubgroupspecies subgroup
    SpecificObservationLocationsspecific observation locations
    Subclasssubclass
    Subcohortsubcohort
    Subdivisionsubdivision
    Subfamilysubfamily
    Subgenussubgenus
    Subkingdomsubkingdom
    Subordersuborder
    Subphylumsubphylum
    Subsectionsubsection
    Subspeciessubspecies
    Subtribesubtribe
    Superclasssuperclass
    Superdivisionsuperdivision
    Superfamilysuperfamily
    Superkingdomsuperkingdom
    Superordersuperorder
    Superphylumsuperphylum
    TaxonomicLeveltaxonomic level
    TaxonomicSequencetaxonomic sequence
    TerrestrialBiomesterrestrial biomes
    Tribetribe
    TrophicLeveltrophic level
    Varietyvariety
    Weightweight
    WetlandBiomeswetland biomes
    WorldPopulationworld population

Details

  • "TaxonomicSpecies" entities include many taxonomic levels, from kingdom to various subspecies levels. They cover over one million taxa, including animals, plants, fungi, archaea, bacteria and viruses.
  • Some properties are available for the "TaxonomicSpecies" entity type as a whole and can be given using the form EntityValue["TaxonomicSpecies",property]. Such properties include:
  • "Properties"the list of available properties
    "PropertyCanonicalNames"the standard names of available properties
    "SampleEntities"a sample list of available entities (typically of length 10)
    "EntityCount"number of entities available
    "Entities"the list of available entities
    "EntityCanonicalNames"the standard names of available entities
    "PropertyClasses"the list of available property classes
    "PropertyClassCanonicalNames"the standard names of available property classes
    "PropertyCount"number of properties available
  • The following annotations can be used in the third argument of EntityValue["TaxonomicSpecies",property,annotation]:
  • "Source"source information for the property
    "Date"the date associated with the entity-property value (if any)
    "EntityAssociation"an association of entities and entity-property values
    "PropertyAssociation"an association of properties and entity-property values
    "EntityPropertyAssociation"an association in which the specified entities are keys, and values are a nested association of properties and entity-property values
    "PropertyEntityAssociation"an association in which the specified properties are keys, and values are a nested association of entities and entity-property values
    "Dataset"a dataset in which the specified entities are keys, and values are an association of property names and entity-property values
  • The following annotations can be used in the second argument of EntityValue[property,annotation]:
  • "Qualifiers"the list of possible qualifiers for the property
    "QualifierValues"the list of possible values that can be given to each qualifier
    "DefaultQualifierValues"the list of default values for the property's qualifiers
    "Description"a brief textual description of the property
    "Definition"a detailed textual definition of the property
    "PhysicalQuantity"the physical quantity associated with the entity-property value
    "Unit"the unit associated with the entity-property value
  • A qualifier value of Automatic indicates that an applicable format of values can be used; e.g. for the "Date" qualifier, this includes a proper date or date span.

Examples

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Basic Examples  (6)

Use for entity discovery:

Find a property value for an entity:

Retrieve a dataset of all available properties for an entity:

The "TaxonomicSpecies" entity type is hierarchically organized:

Retrieve the list of related entity types:

Find the direct children of the "TaxonomicSpecies" entity type:

Further find the children of the "TaxonomicSpecies"->"Eukaryote" entity type:

Child types inherit properties of their parents:

Find properties specific to the "TaxonomicSpecies"->"Eukaryote"->"Animal" entity type:

Explore an animal property:

Use implicit entity syntax to find the fastest flight-capable animal:

Scope  (4)

Implicit Entity Classes  (3)

Find mammals found in a specific location:

Find endangered fish found in a freshwater biome:

Find the three heaviest rodents:

Property Classes  (1)

Find available "PropertyClasses" for the "TaxonomicSpecies" entity type:

Access geographic properties:

Applications  (1)

Visualize the taxonomy graph of an animal:

Relations to Other Entity Types  (4)

Access properties of plants:

Retrieve a dataset of selected properties for a plant species:

Use implicit entity syntax to find yellow flowering annuals that require full sun and can grow in the USDA hardiness zone 8:

Get a map of USDA hardiness zone 8:

Access properties of fungi:

Retrieve a dataset of selected properties for a fungus species:

Access properties of bacteria:

Retrieve a dataset of selected properties for a bacteria species:

Find human diseases associated with microbes:

Find human gut microbiota:

Neat Examples  (2)

Map countries where animals are observed:

Illustrate the food chain of selected animals observed in a specified location: