WOLFRAM SYSTEM MODELER
ReactionsPartial models, extended by models in the package BioChem.Reactions |
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Package Contents
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Basic properties of reactions |
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Partial models of modifiers to reactions |
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Uni-uni irreversible reaction |
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Uni-uni reversible reaction |
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Uni-bi irreversible reaction |
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Uni-bi reversible reaction |
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Uni-tri irreversible reaction |
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Uni-tri reversible reaction |
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Uni-quad irreversible reaction |
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Uni-quad reversible reaction |
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Uni-multi irreversible reaction |
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Uni-multi reversible reaction |
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Bi-uni irreversible reaction |
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Bi-uni reversible reaction |
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Bi-bi irreversible reaction |
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Bi-bi reversible reaction |
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Bi-tri irreversible reaction |
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Bi-tri reversible reaction |
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Bi-quad irreversible reaction |
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Bi-quad reversible reaction |
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Bi-multi irreversible reaction |
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Bi-multi reversible reaction |
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Tri-uni irreversible reaction |
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Tri-uni reversible reaction |
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Tri-bi irreversible reaction |
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Tri-bi reversible reaction |
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Tri-tri irreversible reaction |
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Tri-tri reversible reaction |
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Tri-quad irreversible reaction |
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Tri-quad reversible reaction |
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Tri-multi irreversible reaction |
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Tri-multi reversible reaction |
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Quad-uni irreversible reaction |
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Quad-uni reversible reaction |
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Quad-bi irreversible reaction |
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Quad-bi reversible reaction |
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Quad-tri irreversible reaction |
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Quad-tri reversible reaction |
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Quad-quad irreversible reaction |
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Quad-quad reversible reaction |
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Quad-multi irreversible reaction |
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Quad-multi reversible reaction |
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Multi-uni irreversible reaction |
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Multi-uni reversible reaction |
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Multi-bi irreversible reaction |
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Multi-bi reversible reaction |
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Multi-tri irreversible reaction |
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Multi-tri reversible reaction |
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Multi-quad irreversible reaction |
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Multi-quad reversible reaction |
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Multi-multi irreversible reaction |
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Multi-multi reversible reaction |
Information
This package contains partial reaction models that can be used as templates when composing new reactions. In fact all reactions found in the Reactions package are based on these partial reaction models.
All reactions need at least one substrate and at least one product. This package contains base classes for any combination of substrates and products for reversible as well as irreversible reactions, as illustrated in Fig. 1. The first letter in the reaction name indicates the number of substrates, and the second the number of products. Finally, the third letter indicates if the reaction is reversible (r) or irreversible (i). All this information is also illustrated by the icon.
Note that all partial reaction models include definitions of stoichiometric coefficients (nS1, nS2, ... and nP1, nP2, ...). These coefficients correspond to the stoichiometry attribute in SBML and should not appear in the reaction rate formula in the reaction.
Fig. 1 Some of the reactions
All reactions need at least one substrate and at least one product. This package contains base classes for any combination of substrates and products for reversible as well as irreversible reactions, as illustrated in Fig. 1. The first letter in the reaction name indicates the number of substrates, and the second the number of products. Finally, the third letter indicates if the reaction is reversible (r) or irreversible (i). All this information is also illustrated by the icon.
Note that all partial reaction models include definitions of stoichiometric coefficients (nS1, nS2, ... and nP1, nP2, ...). These coefficients correspond to the stoichiometry attribute in SBML and should not appear in the reaction rate formula in the reaction.
Fig. 1 Some of the reactions
Wolfram Language
In[1]:=
SystemModel["BioChem.Interfaces.Reactions"]
Out[1]:=
