WOLFRAM SYSTEM MODELER
CytoplasmCytoplasm compartment |
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Diagram
Wolfram Language
In[1]:=
SystemModel["BioChem.Examples.CircadianOscillator.Cytoplasm"]
Out[1]:=
Information
Cytoplasm compartment
See also
The Container model for further documentation of the system and simulation results.Parameters (10)
| mainCompartment |
Value: false Type: Boolean Description: Specifies whether the compartment is a main (top-level) compartment. Used in SBML import/export. |
|---|---|
| k1d |
Value: Type: Real |
| k2b |
Value: Type: Real |
| q |
Value: Type: Real |
| k2d |
Value: Type: Real |
| k2t |
Value: Type: Real |
| k4d |
Value: Type: Real |
| k5b |
Value: Type: Real |
| k5d |
Value: Type: Real |
| k5t |
Value: Type: Real |
Inputs (2)
| trans_per2_cry |
Type: Real |
|---|---|
| trans_Bmal1 |
Type: Real |
Connectors (4)
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y3_node |
Type: ProductConnector Description: Connector between substances and reactions (product side of reaction) |
|---|---|---|
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y2_node |
Type: SubstanceConnector Description: Connector between substances and reactions |
|
y6_node |
Type: ProductConnector Description: Connector between substances and reactions (product side of reaction) |
|
y5_node |
Type: SubstanceConnector Description: Connector between substances and reactions |
Components (15)
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y1 |
Type: y1_ Description: Per2 or Cry mRNA |
|---|---|---|
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y2 |
Type: y2_ Description: PER2_CRY_complex_cytoplasm |
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y4 |
Type: y4_ Description: Bmal1 mRNA |
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y5 |
Type: y5_ Description: BMAL1_cytoplasm |
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ambientSubstance |
Type: AmbientSubstance Description: Substance used as a reservoir in reactions |
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per2_cry_transcription |
Type: per2_cry_transcription_ Description: per2_cry_transcription |
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per2_cry_mRNA_degradation |
Type: per2_cry_mRNA_degradation_ Description: per2_cry_mRNA_degradation |
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per2_cry_complex_formation |
Type: per2_cry_complex_formation_ Description: per2_cry_complex_formation |
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cytoplasmic_per2_cry_complex_degradation |
Type: cytoplasmic_per2_cry_complex_degradation_ Description: cytoplasmic_per2_cry_complex_degradation |
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per2_cry_nuclear_import |
Type: per2_cry_nuclear_import_ Description: per2_cry_nuclear_import |
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Bmal1_transcription |
Type: Bmal1_transcription_ Description: Bmal1_transcription |
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Bmal1_mRNA_degradation |
Type: Bmal1_mRNA_degradation_ Description: Bmal1_mRNA_degradation |
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BMAL1_translation |
Type: BMAL1_translation_ Description: BMAL1_translation |
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cytoplasmic_BMAL1_degradation |
Type: cytoplasmic_BMAL1_degradation_ Description: cytoplasmic_BMAL1_degradation |
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BMAL1_nuclear_import |
Type: BMAL1_nuclear_import_ Description: BMAL1_nuclear_import |
Used in Examples (1)
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BioChem.Examples.CircadianOscillator Main model of the example |