WOLFRAM SYSTEM MODELER
CytosolCytosolic compartment |
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Diagram
Wolfram Language
In[1]:=
SystemModel["BioChem.Examples.YeastGlycolysis.Cytosol"]
Out[1]:=
Information
A model for the cytosol compartment used in the glycolysis model for Saccharomyces cerevisiae.
Parameters (1)
| mainCompartment |
Value: false Type: Boolean Description: Specifies whether the compartment is a main (top-level) compartment. Used in SBML import/export. |
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Connectors (5)
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Glc_node |
Type: SubstanceConnector Description: Connector between substances and reactions |
|---|---|---|
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G6P_node |
Type: SubstanceConnector Description: Connector between substances and reactions |
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EtOH_node |
Type: SubstanceConnector Description: Connector between substances and reactions |
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Glyc_node |
Type: SubstanceConnector Description: Connector between substances and reactions |
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ACA_node |
Type: SubstanceConnector Description: Connector between substances and reactions |
Components (31)
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Glc |
Type: Glc_ Description: Cytosolic glucose |
|---|---|---|
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ATP |
Type: ATP_ Description: ATP |
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G6P |
Type: G6P_ Description: Glucose-6-Phosphate |
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ADP |
Type: ADP_ Description: ADP |
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F6P |
Type: F6P_ Description: Fructose-6-Phosphate |
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FBP |
Type: FBP_ Description: Fructose 1,6-bisphosphate |
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GAP |
Type: GAP_ Description: Glyceraldehyde 3-phosphate |
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DHAP |
Type: DHAP_ Description: Dihydroxyacetone phosphate |
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NAD |
Type: NAD_ Description: NAD |
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BPG |
Type: BPG_ Description: 1,3-Bisphosphoglycerate |
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NADH |
Type: NADH_ Description: NADH |
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PEP |
Type: PEP_ Description: Phosphoenolpyruvate |
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Pyr |
Type: Pyr_ Description: Pyruvate |
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ACA |
Type: ACA_ Description: Acetaldehyde |
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EtOH |
Type: EtOH_ |
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Glyc |
Type: Glyc_ Description: Glycerol |
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AMP |
Type: AMP_ Description: AMP |
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vHK |
Type: vHK_ Description: Hexokinase |
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vPGI |
Type: vPGI_ Description: Phosphoglucoisomerase |
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vPFK |
Type: vPFK_ Description: Phosphofructokinase |
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vALD |
Type: vALD_ Description: Aldolase |
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vTIM |
Type: vTIM_ Description: Triosephosphate isomerase |
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vGAPDH |
Type: vGAPDH_ Description: Glyceraldehyde 3-phosphate dehydrogenase |
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vlpPEP |
Type: vlpPEP_ Description: Phosphoenolpyruvate synthesis |
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vPK |
Type: vPK_ Description: Pyruvate kinase |
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vPDC |
Type: vPDC_ Description: Pyruvate decarboxylase |
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vADH |
Type: vADH_ Description: Alcohol dehydrogenase |
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vlpGlyc |
Type: vlpGlyc_ Description: Glycerol synthesis |
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vstorage |
Type: vstorage_ Description: Storage |
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vconsum |
Type: vconsum_ Description: ATP consumption |
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vAK |
Type: vAK_ Description: Adenylate kinase |
Used in Examples (1)
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BioChem.Examples.YeastGlycolysis Main model of the example |