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"UniProt" (Service Connection)

Connect to the UniProt API using the Wolfram Language to get comprehensive information about protein sequences and functions.

Connecting & Authenticating

ServiceConnect["UniProt"] creates a connection to the UniProt API. If a previously saved connection can be found, it will be used; otherwise, a new authentication request will be launched.

Requests

Protein Sequence and Functional Information

"ProteinDetails" — get detailed information about protein sequence and function from UniProt

Parameters:
  • "UniProtID"NoneUniProt ID

    • List of Relevant Proteins

    "ProteinSearch" — get detailed information proteins related to specific search query

    Parameters:
  • "Query"Nonesearch query
    MaxItems10total number of output structures
    "IncludeIsoforms"Falseincluding isoforms

    • Examples

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    Basic Examples  (1)

    Create a new connection to UniProt:

    Get details about protein sequence and function by providing the UniProt ID through an ExternalIdentifier:

    Pass the identifier in as a string:

    Scope  (2)

    Get information about proteins related to a query:

    Specify the number of outputs:

    Visualize the first protein related to receptor tyrosine kinase using the "AlphaFoldDatabase" service: