WOLFRAM SYSTEM MODELER

ConstantCompartment

Standard compartment (constant volume)

Wolfram Language

In[1]:=
SystemModel["BioChem.Compartments.ConstantCompartment"]
Out[1]:=

Information

Compartment model with constant volume. The volume is specifed by specifying an initial value for the variable "V".

The model also includes a SBML-specific parameter "mainCompartment" used to specify whether or not the compartment is a main (top-level) compartment. The parameter is found under the "SBML" tab.

Parameters (1)

mainCompartment

Value: false

Type: Boolean

Description: Specifies whether the compartment is a main (top-level) compartment. Used in SBML import/export.

Extended by (24)

MichaelisMenten

BioChem.Examples

An enzymatic reaction with Michaelis-Menten kinetics

Cytosol

BioChem.Examples.YeastGlycolysis

Cytosolic compartment

Glycolysis

BioChem.Examples.YeastGlycolysis

Main model of the example

MealSimulationModel

BioChem.Examples.MealSimulation

Main model

PortalVein

BioChem.Examples.MealSimulation.Modules

Portal vein module

PlasmaInsulin

BioChem.Examples.MealSimulation.Modules

Plasma insulin module

PlasmaGlucose

BioChem.Examples.MealSimulation.Modules

Plasma glucose module

PeripheralTissue

BioChem.Examples.MealSimulation.Modules

Peripheral tissue module describing glucose uptake

LiverInsulin

BioChem.Examples.MealSimulation.Modules

Liver module describing hepatic extraction of insulin

LiverGlucose

BioChem.Examples.MealSimulation.Modules

Liver module describing endogenous glucose production

Kidneys

BioChem.Examples.MealSimulation.Modules

Kidney module describing glucose excretion

GITract

BioChem.Examples.MealSimulation.Modules

Gastrointestinal tract module describing glucose absorption

BetaCells

BioChem.Examples.MealSimulation.Modules

Beta cell module describing insulin secretion

MainModel

BioChem.Examples.InsulinSignaling

Main model of the example

cell

BioChem.Examples.GMO

Main model of the example

Cytoplasm

BioChem.Examples.CircadianOscillator

Cytoplasm compartment

Nucleus

BioChem.Examples.CircadianOscillator

Nucleus compartment

Container

BioChem.Examples.CircadianOscillator

Main model of the example

cell

BioChem.Examples.CellDivision

Main model of the example

Mitochondria

BioChem.Examples.CentralMetabolism

Mitochondria compartment

extra_cellular

BioChem.Examples.CentralMetabolism

Main model of the example

Cytosol

BioChem.Examples.CentralMetabolism

Cytosolic compartment

Endoplasmic_Reticulum

BioChem.Examples.CaOscillations

Endoplasmic reticulum compartment

Cytosol

BioChem.Examples.CaOscillations

Main model of the example