BioSequencePlot

BioSequencePlot[bioseq]

creates a two-dimensional schematic diagram of the biomolecular sequence bioseq.

Details

Examples

open allclose all

Basic Examples  (3)

Create a biomolecular sequence and plot it:

Plot a biomolecular sequence with higher-order bonds:

Plot a circular peptide with bonds:

Scope  (5)

Motifs of a hybrid strand can be identified by a change in color:

Multiple strands can all be plotted together:

Longer sequences do not show letters by default, but instead provide further information in tooltips:

More complicated reduced structures have tooltips to aid navigation:

Very long sequences are grouped into ranges to avoid generating plots that are too large:

Neat Examples  (1)

Repeated RNA pseudoknots demonstrate how the same structure is rendered at changing scales:

Wolfram Research (2021), BioSequencePlot, Wolfram Language function, https://reference.wolfram.com/language/ref/BioSequencePlot.html.

Text

Wolfram Research (2021), BioSequencePlot, Wolfram Language function, https://reference.wolfram.com/language/ref/BioSequencePlot.html.

CMS

Wolfram Language. 2021. "BioSequencePlot." Wolfram Language & System Documentation Center. Wolfram Research. https://reference.wolfram.com/language/ref/BioSequencePlot.html.

APA

Wolfram Language. (2021). BioSequencePlot. Wolfram Language & System Documentation Center. Retrieved from https://reference.wolfram.com/language/ref/BioSequencePlot.html

BibTeX

@misc{reference.wolfram_2022_biosequenceplot, author="Wolfram Research", title="{BioSequencePlot}", year="2021", howpublished="\url{https://reference.wolfram.com/language/ref/BioSequencePlot.html}", note=[Accessed: 02-July-2022 ]}

BibLaTeX

@online{reference.wolfram_2022_biosequenceplot, organization={Wolfram Research}, title={BioSequencePlot}, year={2021}, url={https://reference.wolfram.com/language/ref/BioSequencePlot.html}, note=[Accessed: 02-July-2022 ]}