MoleculePlot3D
MoleculePlot3D[mol]
creates a three-dimensional model of the molecule mol.
MoleculePlot3D[mol,patt]
creates a model of mol where all atoms and bonds matching the pattern patt are highlighted.
Details and Options


- If the molecule does not have structure diagram coordinates, they will be generated automatically according to the molecule's AtomCoordinates option.
- Possible values for patt include any atom, bond or molecular pattern as recognized by FindMoleculeSubstructure.
- Patterns entered as Style[patt,spec]will be styled according to spec.
- MoleculePlot3D has the same options as Graphics3D, with the following additions and changes:
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Boxed False whether to draw the bounding box ColorRules Automatic a list of rules PlotLegends None legends for highlights PlotTheme Automatic overall theme for the plot - Supported plot themes include:
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"HeavyAtom" do not display hydrogens "BallAndStick" display atoms and bonds using Sphere and Cylinder primitives "Spacefilling" atoms are depicted with spheres with radius matching the van der Waals radius "Tubes" atoms omitted "Wireframe" bonds rendered as lines - Typical settings for PlotLegends include:
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None no legend Automatic automatically determine legend {lbl1,lbl2,…} use lbl1, lbl2, … as legend labels Placed[lspec,…] specify placement for legend
Examples
open allclose allBasic Examples (1)
Scope (2)
Wolfram Research (2019), MoleculePlot3D, Wolfram Language function, https://reference.wolfram.com/language/ref/MoleculePlot3D.html.
Text
Wolfram Research (2019), MoleculePlot3D, Wolfram Language function, https://reference.wolfram.com/language/ref/MoleculePlot3D.html.
BibTeX
BibLaTeX
CMS
Wolfram Language. 2019. "MoleculePlot3D." Wolfram Language & System Documentation Center. Wolfram Research. https://reference.wolfram.com/language/ref/MoleculePlot3D.html.
APA
Wolfram Language. (2019). MoleculePlot3D. Wolfram Language & System Documentation Center. Retrieved from https://reference.wolfram.com/language/ref/MoleculePlot3D.html